[gmx-users] gromacs 4.5 tools for trajectory analysis

Hasan haska hasanhaska at yahoo.com
Fri Sep 9 22:14:29 CEST 2011

Dear gromacs users,

I loaded my .psf and then loaded .pdb file into psf  in VMD then used the command “ topo writegmxtop myfile.top” in tk console. I finally generated a gromacs .top file successfully. I want to use gromacs 4.5 tools for trajectory analysis with namd dcd and pdb files. But how can I generate a gromacs tpr file using this .top file ? Can you please give me the information about generating tpr file ?  
Thanks a lot for your help.
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