[gmx-users] (no subject)

[Justin A. Lemkul]

Алексей Раевский wrote:
> Hi. I've look through the manual and didn't find an answer on my 
> question: i've got a trajectory and i want to convert it in *.pdb with 
> such parameters of index file [all atoms within a sphere with a chosen 
> radius around selected atom]. What can i do? Thank you
> 

Use g_select to generate the index group and trjconv to write the file in the 
format (and with the contents) that you want.

-Justin

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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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