[gmx-users] g_dist error

Justin A. Lemkul jalemkul at vt.edu
Mon Sep 12 13:19:56 CEST 2011

aiswarya pawar wrote:
> Hi Users,
> Am using g_dist to find the distance between water and protein. but my 
> output has the values of SOL-water distance.
> t: 1  136 SOL 2336 OW  0.772373 (nm)

This is not a water-water distance, it is the output of the -dist option telling 
you that water molecule 136 has its OW atom at 0.7723273 nm from whatever your 
reference group is.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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