[gmx-users] gmx output in VMD

Justin A. Lemkul jalemkul at vt.edu
Tue Sep 13 13:01:18 CEST 2011

meisam valizadeh kiamahalleh wrote:
> Dear Gmx users
> I have run MD on carbon nanotube with solvated drug molecules inside and 
> outside the tubes. Kindly would you please let me know how I 
> can visualize and calculate the amount of molecules only inside the 
> carbon nanotube during MD process. May I know what keywords I should use 
> in graph presentation? 
> or
> Do you suggest any other software to solve this problem?

This is a question best posted to the VMD mailing list.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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