[gmx-users] what difference between RMSF and RMDEV
ahmedo047 at gmail.com
Wed Sep 21 18:27:35 CEST 2011
g_rmsf -s run.tpr -f run.xtc -od rmsdev.xvg -o rmsf.xvg -res
With the option -od the root mean square deviation with respect to the
reference structure is calculated.
RMSDEV is the RMSD per residue (the root mean square deviation with respect
to the reference structure is calculated).
RMSF is the RMSD per residue (the root mean square fluctuation (RMSF, i.e.
standard deviation) of atomic positions after (optionally) fitting to a
reference frame). That is, it is the measurement averaged over all atoms in
Now what difference?
I am confused.
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