[gmx-users] error while install GMX4.5.5

[Roland Schulz]

On Wed, Sep 21, 2011 at 9:01 PM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:

>  On 21/09/2011 7:27 PM, zhongjin wrote:
>
>   Dear GMX users:
> While I am installing gmx4.5.5, an error occured after "make" command :
> cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2
> -funroll-all-loops -std=gnu99 -pthread -I./include -o .libs/grompp grompp.o
> -L/home/hzj1000/software/fftw/lib ./.libs/libgmxpreprocess.so
> /home/hzj1000/gromacs-4.5.5/src/mdlib/.libs/libmd.so ../mdlib/.libs/libmd.so
> /home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so
> ../gmxlib/.libs/libgmx.so -ldl -lnsl -lm  -Wl,--rpath
> -Wl,/home/hzj1000/software/GMX/gromacs4.5.5/lib
> /home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so: undefined reference
> to `pthread_setaffinity_np'
> collect2: ld returned 1 exit status
> make[3]: *** [grompp] Error 1
> make[3]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src/kernel'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
>
>
>
> This shouldn't happen. What compiler and hardware? configure or CMake? What
> command lines?
>

Please also add: Which Unix? Is it Linux? Distribution? What libc version?

Roland


> Mark
>



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