[gmx-users] Re: hkl harker sections
Mark.Abraham at anu.edu.au
Sun Apr 1 01:06:15 CEST 2012
On 1/04/2012 12:12 AM, lloyd riggs wrote:
> Hello all,
> Does anyone know where to look to do a slice of my unit cell along sections (energies, forces etc...) or to just give a list of all atoms in the slice. Something like an h,k,l or x,y,z slice through a section.
You can use g_select to create an index group based on geometric
criteria to use as input to any of the other tools, but any such index
group is only applicable to the frame that generated it, because
diffusion will occur. Proper dynamic selections are planned for future
GROMACS releases. Meantime, you'd have to script g_select to feed index
groups to your analysis tool of choice.
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