[gmx-users] Residue 'FOR' not found in residue topology database

Shima Arasteh shima_arasteh2001 at yahoo.com
Thu Apr 12 09:40:57 CEST 2012


Dear Gromacs friends,

I attached my .pdb file in this message, as you see, I have formyl residue in it. I'd like to get a .gro output of it by using this commands, but getting the fatal error:

# pdb2gmx -f glc.pdb -o glc.gro -ignh -ter -water spc 


Fatal error:
Residue 'FOR' not found in residue topology database

How can I solve this problem? 


Thanks ,
Shima
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