[gmx-users] progressive imbalance in REMD
francesco oteri
francesco.oteri at gmail.com
Fri Apr 13 17:46:20 CEST 2012
Dear gromacs users,
I am running REMD through gromacs 4.5.5 using 10replicas.
I am experiencing a problem with simulation efficiency, in particular from
gromacs output, like the following:
vol 0.49 imb F 4% vol 0.64 imb F 8% vol 0.17 imb F 2% vol 0.56 imb F
10% vol 0.17! imb F 7% vol 0.75 imb F 11% vol 0.45 imb F 11% vol 0.13!
imb F 8% vol 0.45 imb F 16% vol 0.55 imb F 23% step 735900, will finish
Mon Apr 16 07:29:53 2012
it seems that higher temperature replicas suffer of an higher imbalance
between force and PME.
These are the average values:
4.58991117815
5.5175129881
6.32679738562
7.21887045416
8.1979219038
9.45466733702
10.9115133233
12.5899111781
15.0987095693
19.5630970337
Of course this problem impacts on overall performances.
My questions are:
1) Is the progressive imbalance expected?
2) Is there any way to alleviate the problem?
Francesco
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