[gmx-users] Pseudo 2-D Ewald Summation and Slab Geometry
adeyoung at andrew.cmu.edu
Sat Apr 14 03:49:51 CEST 2012
I am simulating a capacitor (in which the dielectric is liquid between the
plates), with charged electrodes parallel to the xy plane. Because the
system is effectively two-dimensional, I am using ewald_geometry = 3dc,
which applies a force and potential correction in the z dimension, giving a
pseudo 2-D Ewald summation.
However, I observe a drift in the electric potential between the plates.
Specifically, I use g_potential to solve the Poisson equation and determine
the electric potential as a function of the z coordinate. The liquid has a
structure such that an electric double layer is formed, and this cancels off
much of the electric field due to the charged electrodes. So, I would
expect that the potential between the plates is constant (i.e., a plot of
the electric potential Phi versus z is expected to be flat). This is in
fact what I observe when I simulate the same system using another MD
package, using exactly the same force field parameters and the analogous
(same correction equations, just different code) force and potential
correction in the z dimension to produce a pseudo 2-D Ewald summation: in
that other MD package, the electric potential is constant (flat) between the
capacitor plates. But in Gromacs (4.5.5), the potential is not constant
(flat) between the plates; rather, it is linear with a non-zero slope.
Has anyone else experienced such a "drift" in the electric potential when
using a slab geometry and ewald_geometry = 3dc? Do you have any ideas of
what might cause this and how I can fix this?
Thank you very much.
Carnegie Mellon University
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