[gmx-users] how to run g_tune_pme in cluster?

[Albert]

hello:
   it can find mdrun correctly. and it is only give me the log file as I 
mentioned in previous thread.

thank you very much

On 04/26/2012 09:53 AM, Carsten Kutzner wrote:
> Hi,
>
> what output does g_tune_pme provide? What is in "log" and in
> "perf.out"?
> Can it find the correct mdrun / mpirun executables?
>
> Carsten
>
>
> On Apr 26, 2012, at 9:28 AM, Albert wrote:
>
>> Hello:
>>   Does anybody have any idea how to run g_tune_pme in a cluster? I tried many times with following command:
>>
>> g_tune_pme_d -v -s npt_01.tpr -o npt_01.trr -cpo npt_01.cpt -g npt_01.log -launch -nt 24>  log&
>>
>> but it always failed.
>>
>>
>> Option       Type   Value   Description
>> ------------------------------------------------------
>> -[no]h       bool   no      Print help info and quit
>> -[[CUDANodeA:03384] [[60523,1],22] ORTE_ERROR_LOG: A message is attempting to be sent to a process whose contact information is unknown in file rml_oob_send.c at line 105
>> [CUDANodeA:03384] [[60523,1],22] could not get route to [[INVALID],INVALID]
>> [CUDANodeA:03384] [[60523,1],22] ORTE_ERROR_LOG: A message is attempting to be sent to a process whose contact information is unknown in file base/plm_base_proxy.c at line 86
>>
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