[gmx-users] Re: GPCR MD Tutorial Using GROMACS (URL)

[Justin A. Lemkul]

On 4/26/12 9:35 AM, Bala S wrote:
> Dear Anirban,
>
> Thanks for the tutorial you have created for the newbies like me to follow.
>
> I wonder the tutorial is only for the GPCRs not applicable for other
> membrane proteins?
>

Tutorials present possible workflows.  Anirban's tutorial does not significantly 
differ from my own (linked from his) which I happen to know has been applied to 
many different systems.  There is nothing GPCR-specific in this new tutorial, 
just like there is nothing KALP-specific about mine.

> I also have another question about slecting a lipidbilayer, what is the
> criteria is selecting it, for instance popc, dopc or dppc?
>

The choice of lipid depends on what you need to model.

-Justin

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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