[gmx-users] Re: GPCR MD Tutorial Using GROMACS (URL)

Justin A. Lemkul jalemkul at vt.edu
Thu Apr 26 19:40:17 CEST 2012

On 4/26/12 9:35 AM, Bala S wrote:
> Dear Anirban,
> Thanks for the tutorial you have created for the newbies like me to follow.
> I wonder the tutorial is only for the GPCRs not applicable for other
> membrane proteins?

Tutorials present possible workflows.  Anirban's tutorial does not significantly 
differ from my own (linked from his) which I happen to know has been applied to 
many different systems.  There is nothing GPCR-specific in this new tutorial, 
just like there is nothing KALP-specific about mine.

> I also have another question about slecting a lipidbilayer, what is the
> criteria is selecting it, for instance popc, dopc or dppc?

The choice of lipid depends on what you need to model.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


More information about the gromacs.org_gmx-users mailing list