[gmx-users] Acpype doubts

[Alan]

Hi Thales,

Amber 1.5? You mean Amber12 and ambertools12?

I haven't test with them yet, but it would help me if you run in the debug
mode and post the output here for me:

acpype -di proteinname.mol2 -c user


Thanks,

Alan

On 26 April 2012 19:02, Thales Kronenberger <kronenberger7 at gmail.com> wrote:

> I configure Amber1.5 and installed the Acpype compatible (the tests went
> pretty well)
>
> BUT when I tried to submit my own job by the line
>
> acpype -i proteinname.mol2 -c user
>
> i got the message:
>
> ==============================
> =================================================================
> | ACPYPE: AnteChamber PYthon Parser interfacE v. 2011-12-19 11:11:36Z Rev:
> 373 (c) 2011 AWSdS |
>
> ===============================================================================================
> ACPYPE FAILED: [Errno 2] No such file or directory: 'tmp'
> Total time of execution: less than a second
> laboratorio24 at laboratorio24-desktop:~/dinamicas/ATP$
>
> it's my first time so take it easy pls ;)
>
>
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-- 
Alan Wilter SOUSA da SILVA, DSc
Bioinformatician, UniProt - PANDA, EMBL-EBI
CB10 1SD, Hinxton, Cambridge, UK
+44 1223 49 4588
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