[gmx-users] calculation of the mean B factor of a PDB file

Justin A. Lemkul jalemkul at vt.edu
Sat Apr 28 15:16:02 CEST 2012

On 4/28/12 5:41 AM, Acoot Brett wrote:
> Dear All,
> Will you please tell me a method or a server which can calculate the mean B
> factor of all residues in a PDB file?

A simple script to parse out the B-factor field and calculate the average should 
do the trick.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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