[gmx-users] Re: g_sas : Total surface area

[Kavyashree M]

Dear users,

Anything wrong in my question?
Kindly give some suggestions.

Thank you
Kavya

On Wed, Dec 12, 2012 at 3:23 PM, Kavyashree M <hmkvsri at gmail.com> wrote:

> Dear users,
>
> Am I clear with the question?
>
> Thank you
> Kavya
>
>
> On Wed, Dec 12, 2012 at 1:36 PM, Kavyashree M <hmkvsri at gmail.com> wrote:
>
>> Dear users,
>>
>> I was calculating solvent accessible surface area for a trajectory
>> using g_sas. I used an index file with 3 sets (A, B, C) of mutually
>> exclusive residues but summing up to 20 amino acids. Then using
>> g_sas calculated sas for these 3 sets separately and whole protein
>> separately for the same trajectory.
>> I was expecting that the average value of
>> Total surface area (protein) ~ Total surface area (A)+Total surface area
>> (B)+Total surface area (C)
>> But it is not so.
>> Could anyone explain me why?
>>
>> Thank you
>> Kavya
>>
>
>