[gmx-users] Energy minimization

[Shima Arasteh]

It's printed in terminal, exactly before showing the values of infinite potential and Max Force and .... .


Sincerely,
Shima


________________________________
From: Dariush Mohammadyani <d.mohammadyani at gmail.com>
To: Shima Arasteh <shima_arasteh2001 at yahoo.com> 
Sent: Sunday, December 16, 2012 5:01 PM
Subject: Re: [gmx-users] Energy minimization


Hi Shima,

Just for my knowledge, how did you find the clashed atom?

Thanks,
Dariush


On Sun, Dec 16, 2012 at 12:19 AM, Shima Arasteh <shima_arasteh2001 at yahoo.com> wrote:

are protein ( atom 288)  and lipid chain. I think if I move them, I may get some other clashes, may I not?
>Any other suggestion?
>
>Thanks.
>
>


-- 

============================
Dariush Mohammadyani
Ph.D Student
Department of Bioengineering
University of Pittsburgh
Pittsburgh, USA