[gmx-users] reverse transformation on Gromacs 3.3.1

francesca vitalini francesca.vitalini11 at gmail.com
Wed Feb 1 18:24:43 CET 2012

I'm having some issues applying the reverse transformation to my system. It
is made of two proteins which should form a stalk, but when I make the
reverse transformation using g_fg2cg what I obtain is the two proteins far
apart. Then, if I try to do the annealing as suggested in the MARTINI
tutorial, the system would simply explode. Do you have any suggestions why?
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