[gmx-users] charmm27 in gromacs
Tom
dnaafm at gmail.com
Wed Feb 15 04:32:37 CET 2012
Dear Gmx Developer or Users,
Can anyone explain which section is for the parameters of improper
dihedral angle
on the file of ffbonded.itp ?
On the file of ffbonded.itp, there is not any comment to differentiate the
proper and improper
dihedral angle.
E.g. on thie file of ffbonded.itp in the directory of charmm27.ff
There are two sections about dihedral angle:
[ dihedraltypes ]
; i j k l func phi0 cp mult
C CT1 NH1 C * 9* 180.00 0.8368 1
......
[ dihedraltypes ]
; i j k l func q0 cq
CPB CPA NPH CPA * 2* 0.0000 174.0544
..........
There is also no explaination the explaination about the function type 2.
It seems difficult for users to edit the parameters.
Thanks for the explainations!
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