[gmx-users] about protein in periodic boundary condition..

[rama david]

Hi GROMACS user,
                          With the help of command
genbox -ci <molecule name> -nmol <molecule no required>
 -o <out put file> -box <dimension >
 I get the desired no of added protein to cell.
 But I found that some part of protein is outside
the cell ..
   Is such system is good for further molecular dynamics study ...??

 After energy minimisation some time the protein is leaving the cell,
 Can I used these last frame for my further position restrained MD
study...???
  Thank you for help
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