[gmx-users] dihedral

[francesca vitalini]

Hi all,
I'm trying to calculate dihedral angles of a big system using g_angle
and providing an ndx file as input. To create the ndx file I use the a
CA | a C | a N | a CA nomenclature, but I'm not sure if it works for
calculating the omega dihedral of my protein.
Can anyone tell me if I'm doing it correctly or how can I check it by my self?
Thanks
Francesca