[gmx-users] error

Mark Abraham Mark.Abraham at anu.edu.au
Wed Feb 29 09:46:13 CET 2012

On 29/02/2012 7:28 PM, RAMYA NAGA wrote:
> Dear friends,
> iam doing protein-ligand dynamics and i have completed everything.iam 
> running for 2ns. After submitting to cluster,i am getting the error as
> File input/output error:
> Cannot rename checkpoint file; maybe you are out of quota?
> For more information and tips for troubleshooting, please check the 
> website at http://www.gromacs.org/Documentation/Errors

There is some problem with your filesystem thinking the files are not 
available. Perhaps some old calculation is still running using it. 
Perhaps you do not have write permission for your directory. Maybe (your 
part of) the filesystem is full. We can only guess.


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