[gmx-users] Segmentation fault

Saba Ferdous saba.bsbi154 at iiu.edu.pk
Sun Jan 1 14:35:17 CET 2012

Dear Gromacs Experts,

I am having problem in execution of a command in Gromacs,

thats when i use dssp for secondary structure analysis.

it gives error:

Reading file md_0_10.tpr, VERSION 4.5.5 (single precision)
Reading file md_0_10.tpr, VERSION 4.5.5 (single precision)
Segmentation fault (core dumped)
saba at linuxserver:~/complex/MD>

I used the command : ulimit -s unlimited
                                 ulimit -c unlimited
but no vain, the problem still persists,
Tell me how to fix it?????

I urgently need to study secondary structure during simulations....

Saba Ferdous
Research Scholar (M. Phil)
National Center for Bioinformatics
Quaid-e-Azam University, Islamabad
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