[gmx-users] After installation help
Willian Pereira Felix
willianpfelix at gmail.com
Mon Jan 2 00:16:44 CET 2012
Hey Mark, thanks for your help. It was extremely useful, now it's solved
and running XD.
Nice year friend :)
On Sat, Dec 31, 2011 at 10:36 PM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:
> On 31/12/2011 11:58 PM, Willian Pereira Felix wrote:
> Hello buddies,
> I'm a very beginner in gromacs and I just got a trick but simple
> situation (for you :D). After the installation of my gromacs on ubuntu
> 11.10 I opened the .bashrc file and put the following code in the following
> place as instructed by installation session on the webpage:
> .BASHRC file
> # Add an "alert" alias for long running commands. Use like so:
> # sleep 10; alert
> alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal
> || echo error)" "$(history|tail -n1|sed -e
> # Alias definitions.
> # You may want to put all your additions into a separate file like
> # ~/.bash_aliases, instead of adding them here directly.
> # See /usr/share/doc/bash-doc/examples in the bash-doc package.
> if [ -f ~/.bash_aliases ]; then
> . ~/.bash_aliases
> #this should be an access to gromacs
> source . /usr/local/gromacs/bin/GMXRC
> "source" and dot are synonyms... use only one, as instructed here:
> This "includes" the contents of that file into the rc file, and propagates
> the changes to the calling shell.
> # enable programmable completion features (you don't need to enable
> # this, if it's already enabled in /etc/bash.bashrc and /etc/profile
> # sources /etc/bash.bashrc).
> if [ -f /etc/bash_completion ] && ! shopt -oq posix; then
> . /etc/bash_completion
> I already tried using . /usr/local/gromacs/GMXRC in the begin and also
> just /usr/local/gromacs/GMXRC (without the point) and even thereafter I
> couldn't run the program. Unfortunately I really don't know what to do I've
> already read the final installation instructions many times and tried to
> google something related but I had no luck.
> Please someone can provide me some light on this issue??
> Thanks all of you.
> Willian Felix
> gmx-users mailing list gmx-users at gromacs.org
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users