[gmx-users] make error "Makefile:347: recipe for target `all-recursive' failed" for Gromacs-4.5.5

[Mark Abraham]

On 4/01/2012 5:04 AM, Rashek Kazi wrote:
> Hi Mark (and all)
>
> Thanks for the response. I ran ./configure --disable-threads this 
> time. ./configure went fine but again upon doing Make I have received 
> a new error:
>
> Creating library file: .libs/libmd.dll.a
> .libs/fft5d.o:fft5d.c:(.text+0x140f): undefined reference to 
> `_fftwf_plan_guru_d                                                   
>             ft'
> .libs/fft5d.o:fft5d.c:(.text+0x18d1): undefined reference to 
> `_fftwf_plan_guru_d                                                   
>             ft_r2c'
> .libs/fft5d.o:fft5d.c:(.text+0x194b): undefined reference to 
> `_fftwf_plan_guru_d                                                   
>             ft_c2r'
> .libs/fft5d.o:fft5d.c:(.text+0x1aef): undefined reference to 
> `_fftwf_execute'
> .libs/fft5d.o:fft5d.c:(.text+0x2133): undefined reference to 
> `_fftwf_execute'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x4a): undefined 
> reference to `_fft                                                     
>           wf_malloc'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x67): undefined 
> reference to `_fft                                                     
>           wf_malloc'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x84): undefined 
> reference to `_fft                                                     
>           wf_malloc'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0xf4): undefined 
> reference to `_fft                                                     
>           wf_plan_many_dft'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x14e): undefined 
> reference to `_ff                                                     
>           twf_plan_many_dft'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x1a5): undefined 
> reference to `_ff                                                     
>           twf_plan_many_dft'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x1fc): undefined 
> reference to `_ff                                                     
>           twf_plan_many_dft'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x253): undefined 
> reference to `_ff                                                     
>           twf_plan_many_dft'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2aa): more undefined 
> references t                                                           
>     o `_fftwf_plan_many_dft' follow
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3b1): undefined 
> reference to `_ff                                                     
>           twf_free'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3bd): undefined 
> reference to `_ff                                                     
>           twf_free'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3e7): undefined 
> reference to `_ff                                                     
>           twf_free'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x3ef): undefined 
> reference to `_ff                                                     
>           twf_free'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x461): undefined 
> reference to `_ff                                                     
>           twf_destroy_plan'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x476): undefined 
> reference to `_ff                                                     
>           twf_destroy_plan'
>
> this continues for a long time and then I get the error at the bottom:
>
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined 
> reference to `_f                                                       
>         ftwf_destroy_plan'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined 
> references                                                             
>    to `_fftwf_destroy_plan' follow
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined 
> reference to `_f                                                       
>         ftwf_free'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined 
> reference to `_f                                                       
>         ftwf_free'
> collect2: ld returned 1 exit status
> Makefile:387: recipe for target `libmd.la <http://libmd.la>' failed
> make[3]: *** [libmd.la <http://libmd.la>] Error 1
> make[3]: Leaving directory `/home/MPrieto/gromacs-4.5.5/src/mdlib'
> Makefile:302: recipe for target `all-recursive' failed
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/home/MPrieto/gromacs-4.5.5/src'
> Makefile:238: recipe for target `all' failed
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/home/MPrieto/gromacs-4.5.5/src'
> Makefile:347: recipe for target `all-recursive' failed
> make: *** [all-recursive] Error 1
>
> looks like a different set of errors here. Do you think it might have 
> to do with using FFTW-3.3?

Yes. Configure thought it found FFTW3, but now you can't link to it. See 
the general installation instructions for the right kind of approach.

Mark

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20120104/02559f75/attachment.html>