[gmx-users] problem

Anik Sen aniksen at csmcri.org
Thu Jan 5 06:19:24 CET 2012

I'm having problems installing Gromacs. I have linux redhat 64 bit. I was installing gromacs 4.5.5 with fftw 3.3. I followed the installation instructions and all went well until the "make install" command, when I executed it I got this error:

/usr/bin/ld: /usr/local/lib/libfftw3.a(plan-dft-r2c-3d.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC

/usr/local/lib/libfftw3.a: could not read symbols: Bad value

collect2: ld returned 1 exit status

make[3]: *** [libmd_d.la<http://libmd_d.la/>] Error 1

make[3]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src/mdlib'

make[2]: *** [all-recursive] Error 1

make[2]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'

make[1]: *** [all] Error 2

make[1]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'

make: *** [all-recursive] Error 1

What to do?
Anik Sen
CSIR-Central Salt & Marine Chemicals Research Institute,
Gijubhai Badheka Marg.
Bhavnagar, Gujarat 364002
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