[gmx-users] strange problem with performance information

Albert mailmd2011 at gmail.com
Thu Jan 5 16:00:57 CET 2012


Hi:
   I am using the following command to submit gromacs md jobs in cluster:

mpirun -exe /opt/gromacs/4.5.5/bin/mdrun_mpi_bg -args "-nosum -dlb yes 
-v -s nvt.tpr" -mode VN -np 128

Then I use command tail -f gromacs.out to check the performance of my 
jobs and I get the following information:

vol 0.38! imb F 11% pme/F 0.67 step 11200, will finish Thu Jan  5 
15:32:42 2012
vol 0.36! imb F 11% pme/F 0.66 step 11300, will finish Thu Jan  5 
15:32:42 2012
vol 0.38  imb F 11% pme/F 0.66 step 11400, will finish Thu Jan  5 
15:32:42 2012
vol 0.37! imb F 12% pme/F 0.66 step 11500, will finish Thu Jan  5 
15:32:42 2012

However, my current time is:

Thu Jan  5 15:56:17 CET 2012

As we can see, gromacs claimed that my job would be finished before my 
current time. Does anybody have any idea to fix this?

THX

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20120105/d47e35f3/attachment.html>


More information about the gromacs.org_gmx-users mailing list