[gmx-users] Protein Structure Prediction

[Steven Neumann]

Dear Gmx Users,

I am wondering whether any of you faced a problem of predicting terminal of
the protein. I submitted my sequence to the software like ITASSER or LOMETS
and obtined some models forming loops which are expected. The confidence of
those models (as this is terminal) are not so high and I am wondering
whether I will confirm sencondary structure of my protein exeprimentally
(CD exepriment) I can trust and choose one of models formed by the server?
Please, let me know if you had similar problem in your past.
I am writing this message on this forum as many people are studiyng
proteins in Gromacs. If you can suggest other mailing list I would be
grateful.

Thank you,

Steven
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