[gmx-users] RMSD value

madhumita das madhumita.bioinfo at gmail.com
Mon Jan 9 10:26:44 CET 2012


                                  I have simulated a protein(pdb id 3D9S)
for 5 nanoseconds. This protein contains 978 residues and after 5
nanoseconds I got 2.35 by comparing pdb structure with simulated one. I
want to know is this value is ok or protein is disrupted?

Yours faithfully,

Madhumita Das
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