[gmx-users] Energy Minimization

[Steven Neumann]

Thank you. Imagine I would like to put ligands in further simulations.
Should I then copy coordinates of my ligands in smaller box (not to overlap
my tube) and then copy both coordinates of ions and ligands plus protein?

On Tue, Jan 10, 2012 at 11:31 AM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:

> On 10/01/2012 10:13 PM, Steven Neumann wrote:
>
>> Thank you. Should I also copy and paste coordinates of my ions or just my
>> protein?
>>
>>
> The randomly-placed ions will be immaterial for EM.
>
>
> Mark
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