[gmx-users] no output in atm-pair.out

aiswarya pawar aiswarya.pawar at gmail.com
Wed Jan 11 12:34:24 CET 2012

Dear Users,

Am running a shell script for the command g_mindist=


groups=`grep "^\[ " -o index.ndx | wc -l`

for ((i=0; i<$groups; i++))
  echo $((i++)) 3393 | g_mindist -f md.xtc -s md.tpr -od $i.xvg -o
atm-pair$i.out -d 0.8  -e 5000 -n index.ndx


here the index file has 3393 groups, the script reads each group against
the final group ie 3393 (1-3393,2-3393,3-3393etc), the .xvg file has been
created successfully but the .out file is empty. Please tell me why its so.

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