[gmx-users] compile template.c

Park, Jae Hyun nmn parkj at ornl.gov
Wed Jan 11 15:18:18 CET 2012


Dear GMX users,

I am trying to compile templete.c in template directory of gromacs-.4.5.3.
However, when I type "make", I got the following errors with termination of compiling:

gcc  -L/home/h1y/gggg/lib -L/home/h1y/fftw3s/lib   -o template template.o -lmd -lgmx -lfftw3f -lxml2  -lnsl -lm    
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_key_delete':
pthreads.c:(.text+0x5b6): undefined reference to `pthread_key_delete'
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_key_create':
pthreads.c:(.text+0x658): undefined reference to `pthread_key_create'
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_join':
pthreads.c:(.text+0x790): undefined reference to `pthread_join'
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_create':
pthreads.c:(.text+0x839): undefined reference to `pthread_create'
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_cancel':
pthreads.c:(.text+0x164): undefined reference to `pthread_cancel'
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_setspecific':
pthreads.c:(.text+0x1eb): undefined reference to `pthread_setspecific'
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_getspecific':
pthreads.c:(.text+0x1f8): undefined reference to `pthread_getspecific'
/home/h1y/gggg/lib/libgmx.a(pthreads.o): In function `tMPI_Thread_mutex_trylock':
pthreads.c:(.text+0x9b7): undefined reference to `pthread_mutex_trylock'
collect2: ld returned 1 exit status
make: *** [template] Error 1

Could anybody help me how to resolve these errors?

Thank you in advance for your kind help.
Best,
Jae H. Park
===================
Jae Hyun Park, Ph.D.
Physics Division
Oak Ridge National Laboratory
P.O. Box 2008, MS-6372
Oak Ridge, TN 37831
Phone (865) 241-1482
E-mail parkj at ornl.gov


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