[gmx-users] isodensity surface

Justin A. Lemkul jalemkul at vt.edu
Mon Jan 30 13:06:08 CET 2012

Nidhi Katyal wrote:
> Thank you for your reply.I was able to create isodensity surface but can 
> i  color my protein surface according to the difference in flexibility 
> of the backbone caused by addition of some molecule and also know 
> addition of which molecules.Please help.

There are various coloring options in all the visualization programs.  Consult 
the documentation for those; this is not a Gromacs problem and thus if you have 
difficulty, your best course of action is to ask for help in the appropriate forum.



Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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