[gmx-users] Regarding error

Seera Suryanarayana palusoori at gmail.com
Mon Jun 4 09:05:01 CEST 2012

Dear all gromacs users,

                                  While i am running pdb2gmx commond i am
getting following error.

Fatal error:
There were 22 missing atoms in molecule Protein_chain_A, if you want to use
this incomplete topology.

I wont ignore the 22 missing atoms by using -missing commond. I would like
to construct a complete protein structure.But i dont know how to construct
the complete protein sturcture.Kindly tell me how to consturct the complete
protein and what are the softwares i have to use here.

Suryanarayana Seera,
PhD student,
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