[gmx-users] Re: dangling bond at at one of the terminal ends
Justin A. Lemkul
jalemkul at vt.edu
Mon Jun 4 13:44:45 CEST 2012
On 6/4/12 7:29 AM, ramaraju801 wrote:
> i checked the .rtp file residues such as DCN,DC5,DGN,DG5,DAN,DA5,DTN,DT5
> dint have any phosphate gp but when i tested the .rtp file with a random DNA
> pdb file it is producing a topology file.
Then you'll have to translate this newfound knowledge into something useful for
your system. How do the .rtp entries compare to the contents of your coordinate
file? Is the absence of phosphate relevant?
Justin A. Lemkul, Ph.D.
Department of Biochemistry
jalemkul[at]vt.edu | (540) 231-9080
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