[gmx-users] trajectory analysis

[Turgay Cakmak]

Hi all,


I would like to get information about *pi-pi stacking*, *van der
Waals*, *electrostatic
and hydrophobic interactions* for my system (several-peptides in a box
filled with water). Can Gromacs compute these interactions?


As far as I see from mailing-list, to get information on *hydrophobic
interactions*, g_mindist and g_sas can be used. But, they look very
different. Which one should be used?


I would deeply appreciate your response.

My best regards,

Turgay,
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20120605/29ebc44b/attachment.html>