[gmx-users] eneconv with -dt flag

Turgay Cakmak turgaycakmak34 at gmail.com
Fri Jun 8 14:40:45 CEST 2012


Hi all,

I have encountered a problem using eneconv with -dt flag.
I have several energy files. Firstly, I concatenated them using the
following.

eneconv  -f  first.edr   second.edr  ....  -settime  -o  total.edr

But, total.edr is so large. To reduce the size of file, I used the below
command:

eneconv -f  total.edr  -dt  100 -o  total_dt100.edr

But, I get the following warning:
               * .*
               * .*

WARNING: missing energy sums at time 69984.000000

WARNING: missing energy sums at time 69988.000000

WARNING: missing energy sums at time 69992.000000

WARNING: missing energy sums at time 69996.000000
Reading energy frame  35000 time 70000.000
WARNING: missing energy sums at time 70000.000000
Last energy frame read 35000 time 70000.000
Last step written from energy.edr: t 70000, step 35000000

Last frame written was at step at step 35000000, time 70000.000000
Wrote 701 frames

Eventually, I get the "total_dt100.edr". But, I am not sure I could
continue using this file.
If someone could help me, I would be glad.

Turgay
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