[gmx-users] radius of gyration

delara aghaie d_aghaie at yahoo.com
Mon Jun 11 11:20:45 CEST 2012


Dear Gromacs users
I have a question abut radius of gyration in proteins. I want to 
calculate it via MD simulation for calcium pump protein. Following the 
same method as described in justin lezozyme tutorial, we have dissolved 
the protein in water.
I want to know that is it wise to study this parameter for this protein out of membrane and only in the box of water???
Thanks
regards
D.M
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