[gmx-users] Rhamnose on 53a6

Thales Kronenberger kronenberger7 at gmail.com
Mon Jun 11 12:06:06 CEST 2012

Have you tryed online servers as
http://davapc1.bioch.dundee.ac.uk/prodrg/or the Acpype (with Amber)?

2012/6/11 Marc Gordon <marcgrdn55 at gmail.com>

> Hello again fellow gromacs users.
> I am looking to model a glucose-rhamnose disaccharide using the 53a6
> forcefield. I wanted to take a look at the naming conventions for
> carbohydrates but I'm battling to find anything in the pdb2gmx force field
> files.
> I downloaded a package of force fields from the GROMOS website to get an
> idea about naming conventions for carbohydrates and couldn't see any
> mention of rhamnose anywhere. (allose, altrose, glucose, mannose, gulose,
> idose, galactose and talose are mentioned but no rhamnose).
> Does anyone have any information on naming conventions for rhamnose or
> whether or not rhamnose was ever present in this force field?
> Regards
> Marc
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