[gmx-users] Rhamnose on 53a6

Thales Kronenberger kronenberger7 at gmail.com
Mon Jun 11 12:06:06 CEST 2012


Have you tryed online servers as
http://davapc1.bioch.dundee.ac.uk/prodrg/or the Acpype (with Amber)?

2012/6/11 Marc Gordon <marcgrdn55 at gmail.com>

> Hello again fellow gromacs users.
>
> I am looking to model a glucose-rhamnose disaccharide using the 53a6
> forcefield. I wanted to take a look at the naming conventions for
> carbohydrates but I'm battling to find anything in the pdb2gmx force field
> files.
>
> I downloaded a package of force fields from the GROMOS website to get an
> idea about naming conventions for carbohydrates and couldn't see any
> mention of rhamnose anywhere. (allose, altrose, glucose, mannose, gulose,
> idose, galactose and talose are mentioned but no rhamnose).
>
> Does anyone have any information on naming conventions for rhamnose or
> whether or not rhamnose was ever present in this force field?
>
>
> Regards
> Marc
>
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20120611/a5a0beba/attachment.html>


More information about the gromacs.org_gmx-users mailing list