[gmx-users] error in grompp run
reisingere at rostlab.informatik.tu-muenchen.de
reisingere at rostlab.informatik.tu-muenchen.de
Wed Jun 13 09:59:45 CEST 2012
Hi,
I want to do a MD simulation in vacuum. So first I wanted to prepare the
files for that with "grompp".
But there I got the error that
"With GBSA implicit solvent, rgbradii must be equal to rlist"
But the 2 values are the same in my .mdp file. Can you please show me
where the failure is?
define = -DPOSRES
integrator = md
emtol = 1000.0
emstep = 0.01
nsteps = 50000
nstlist = 1
ns_type = simple
rgbradii = 0
rlist = 0
coulombtype = cutoff
vdwtype = cutoff
rcoulomb = 0
rvdw = 0
pbc = no
epsilon_rf = 0
implicit_solvent = GBSA
gb_algorithm = HCT
gb_epsilon_solvent = 78.3
nstxout = 1
nstfout = 1
nstvout = 1
nstxtcout = 1
nstlog = 1
Thank you,
Eva
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