[gmx-users] input/output error in production grompp

[Malai]

HI,

Sorry for wrongly typing. The command I issued is:  grompp  -v -f hex1.mdp
-c hex1.pdb -p hex1.top -o hex1.tpr.

The error is bellow:


Error:
Program grompp, VERSION 4.5.4
Source code file: futil.c, line: 491

File input/output error:
hex1.gro
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/**Documentation/Errors<http://www.gromacs.org/Documentation/Errors>


Thanks.



On Wed, Jun 13, 2012 at 7:52 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 6/13/12 7:36 AM, Malai wrote:
>
>> Hi,
>>
>> I used the command following to generate .tpr file for production but I
>> got the
>> following error. Without considering this error, I run production but it
>> is
>> working now. any problem will be in production?
>>
>>
> The command below makes no sense; how is it that you were able to produce
> a .tpr file for your simulation?
>
>
>  -v -f hex1.mpb -c hex1.pdb -p hex1.top -o hex1.pdb
>>
>>
> This is not the command you typed (it contains several errors, both
> logical and typographical), and it certainly has nothing to do with the
> error below, as no reference is made to a file called "hex1.gro."  When
> reporting problems, please always copy and paste directly from your
> terminal.  Re-typing what you think you typed is error prone and wastes
> time.
>
>
>  Error:
>> Program grompp, VERSION 4.5.4
>> Source code file: futil.c, line: 491
>>
>> File input/output error:
>> hex1.gro
>> For more information and tips for troubleshooting, please check the
>> GROMACS
>> website at http://www.gromacs.org/**Documentation/Errors<http://www.gromacs.org/Documentation/Errors>
>>
>>
> I/O errors occur when either a file isn't found in the working directory
> (i.e. doesn't exist) or can't be produced (insufficient permission or disk
> space to write the file).
>
> -Justin
>
> --
> ==============================**==========
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>
> ==============================**==========
>
>
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