[gmx-users] unknown residue (BGC)

[Justin A. Lemkul]

On 6/13/12 8:20 AM, delara aghaie wrote:
> Dear Justin
> If we do not get error when using command pdb2gmx, and so having the .top and
> .gro files, Can we make sure that every thing is ok with our pdb file or maybe
> there exists some other checks to be done on pdb?

If pdb2gmx produces no error, then the contents of the initial coordinate file 
matched the expectations of the force field and thus the topology and resulting 
structure are fine.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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