[gmx-users] input/output error in production grompp

[Malai]

Hello Justin,

Thanks for reply. After getting this, I started to run production run but
here i didnt get any error. so is it OK? or still I need to look at this
error? Thanks

On Wed, Jun 13, 2012 at 8:35 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 6/13/12 8:27 AM, Malai wrote:
>
>> HI,
>>
>> Sorry for wrongly typing. The command I issued is:  grompp -v -f hex1.mdp
>> -c
>> hex1.pdb -p hex1.top -o hex1.tpr.
>>
>> The error is bellow:
>>
>>
>> Error:
>> Program grompp, VERSION 4.5.4
>> Source code file: futil.c, line: 491
>>
>> File input/output error:
>> hex1.gro
>> For more information and tips for troubleshooting, please check the
>> GROMACS
>> website at http://www.gromacs.org/__**Documentation/Errors<http://www.gromacs.org/__Documentation/Errors>
>> <http://www.gromacs.org/**Documentation/Errors<http://www.gromacs.org/Documentation/Errors>
>> >
>>
>>
> Even with the corrected command, I see no way for this error to come up.
>  There is no reference to a .gro file anywhere in your command.
>
>
> -Justin
>
> --
> ==============================**==========
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>
> ==============================**==========
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