[gmx-users] Tutorial KALP-15 in DPPC
shima_arasteh2001 at yahoo.com
Fri Jun 15 16:25:05 CEST 2012
Dear gmx users,
I am doing KALP15 in DPPC following the Justin tutorial http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html . In the second step, the first command is grompp as follow:grompp -f minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr
I want to know if the topol_dppc.top in this command is the .top file which produced by pdb2gmx at the beginning of the first step? If not, so what is that?
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