[gmx-users] Tutorial KALP-15 in DPPC

[Shima Arasteh]

 Dear gmx users,
I am doing KALP15 in DPPC following the Justin tutorial http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html . In the second step, the first command is grompp as follow:grompp -f minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr

I want to know if the topol_dppc.top in this command is the .top file which produced by pdb2gmx at the beginning of the first step? If not, so what is that?



Regards,
Shima
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