[gmx-users] Tutorial KALP-15 in DPPC

Shima Arasteh shima_arasteh2001 at yahoo.com
Fri Jun 15 16:25:05 CEST 2012

 Dear gmx users,
I am doing KALP15 in DPPC following the Justin tutorial http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/03_solvate.html . In the second step, the first command is grompp as follow:grompp -f minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr

I want to know if the topol_dppc.top in this command is the .top file which produced by pdb2gmx at the beginning of the first step? If not, so what is that?

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20120615/4dc26df1/attachment.html>

More information about the gromacs.org_gmx-users mailing list