[gmx-users] protein near the edges of simulation box

[Elton Carvalho]

On Fri, Jun 15, 2012 at 1:23 PM, Tsjerk Wassenaar <tsjerkw at gmail.com> wrote:
> You can specify the protein to have no net center of mass
> motion, by setting it as comm_grps in the .mdp file.
>

If the user is just concerned about visualization, trjconv -center
solves his problem.

-- 
Elton Carvalho
Tel.: +55 11 3091-6985/6922
Dept Física dos Materiais e Mecânica
Instituto de Física
Universidade de São Paulo
P.O. Box 66318 - 05314-970 São Paulo-SP, Brazil