[gmx-users] protein near the edges of simulation box

[Justin A. Lemkul]

On 6/15/12 11:46 AM, Shima Arasteh wrote:
> Dear Elton,
> Where am I supposed to use trjconv -center ? when I want to get the mdrun?

trjconv is a post-processing command that can be used for a variety of purposes, 
of which one of the more common ones is to transform coordinates for convenient 
visualization through operations involving -center or -pbc.

-Justin

-- 
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================