[gmx-users] Strange behaviour of bonds

Shima Arasteh shima_arasteh2001 at yahoo.com
Sun Jun 17 16:23:53 CEST 2012

Hi all,

I simulated a protein in water. When I get its 20 ns trajectory and load it in VMD, I see some bonds stretch suddenly and moves far strangely! Is this problem because of the wrong structure of the protein? Or I may put some restrains on system and solve this problem?
Anybody may suggest me in this about?

Thank you.

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