[gmx-users] (no subject)

[Justin A. Lemkul]

On 6/19/12 8:58 AM, ankita oindrila wrote:
>   I am doing simulation of membrane protein in lipid bilayer for my
> college project!.
>
>   After making the  complex of protein and lipid bilayer,   I was going
> to  the step using  genbox  to  solvate the system.
>
> The error that i am now getting is :
> Fatal error:
> Not enough memory. Failed to realloc 1008588696 bytes for nlist->jjnr,
> nlist->jjnr=0x20026008
> (called from file ns.c, line 537)
>
>
> what should i do??
>

If you need nearly 1 GB to solvate a system, it must be incredibly large. 
Consult the following:

http://www.gromacs.org/Documentation/Errors#Cannot_allocate_memory

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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