[gmx-users] editbox removes dummy atoms

reisingere at rostlab.informatik.tu-muenchen.de reisingere at rostlab.informatik.tu-muenchen.de
Thu Jun 28 16:11:45 CEST 2012

Hi everybody,
I have an protein structure with many dummy atoms around it simulating the
membrane around the protein. Those dummy atoms are signed in the file as
an ATOM.
When I want to put this protein with the membrane in a box with the command

editconf -f 3m71.gro -o 3m71_box.gro -bt dodecahedron -d 1.0 2>>logErr

it removes the membrane dummy atoms except of one Dummy atom. How can that
What do I have to change?

Bests Eva

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