[gmx-users] Berger lipid
Justin A. Lemkul
jalemkul at vt.edu
Fri Jun 29 02:56:47 CEST 2012
On 6/28/12 8:54 PM, Shima Arasteh wrote:
> Yes, I know that as studied the Kalp15 tutorial.
> Sorry, the last question :)
> DO I need to run pdb2gmx to get the top file of POPC in CHARMM36? Is it ok? Because I see that POPC.itp is also required for simulation of protein in bilayer.
You need a topology of some sort. It depends on what parameters you have on
hand. If you do not have popc.itp from anywhere, then you need to generate it
somehow. If it is present in the .rtp file for CHARMM36 that you have, then you
can run pdb2gmx on it.
Justin A. Lemkul, Ph.D.
Department of Biochemistry
jalemkul[at]vt.edu | (540) 231-9080
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