[gmx-users] error with grompp
reisingere at rostlab.informatik.tu-muenchen.de
reisingere at rostlab.informatik.tu-muenchen.de
Fri Jun 29 14:54:20 CEST 2012
Hi everybody,
I added ions to the solvent around my structure with the command:
genion -s 3m71_minim.tpr -o 3m71_minim_ion.gro -p 3m71.top -conc 0.1
-neutral -pname NA+ -nname CL-
and then I select the 13 (SOL)
Now I have in my topology file
[ molecules ]
; Compound #mols
Protein_chain_A 1
DUM 30066
SOL 14305
NA+ 32
CL- 32
which is correct in my opinion.
But now when I want to run grompp:
grompp -v -f minim_solv.mdp -c 3m71_minim_ion.gro -p 3m71.top -o
3m71_minim_ion.tpr 2>>logErr 1>>logOut
I always get the error:
No such moleculetype NA+
although I already included the ion topology file:
; Include topology for ions
#include "amber03.ff/ions.itp"
What is wrong here?
Best Eva
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